Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5453532-SRR5453533-SRR5453534/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  9,948,264
 Normal Paired: 7,614,948 (76.55%)
 Chimeric Paired: 2,090,586 (21.01%)
 Chimeric Ambiguous: 187,552 (1.89%)
 Unmapped: 55,178 (0.55%)
 Ligation Motif Present: 646 (0.01%)
Alignable (Normal+Chimeric Paired): 9,705,534 (97.56%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-02T16:33:40,188]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 2,087,442 (20.98%)
PCR Duplicates: 7,618,092 (76.58%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 2,108,575
Intra-fragment Reads: 925,706 (9.31% / 44.35%)
Below MAPQ Threshold: 99,469 (1.00% / 4.77%)
Hi-C Contacts: 1,062,267 (10.68% / 50.89%)
 Ligation Motif Present: 238  (0.00% / 0.01%)
 3' Bias (Long Range): 85% - 15%
 Pair Type %(L-I-O-R): 26% - 25% - 25% - 24%
Inter-chromosomal: 222,371  (2.24% / 10.65%)
Intra-chromosomal: 839,896  (8.44% / 40.24%)
Short Range (<20Kb): 383,243  (3.85% / 18.36%)
Long Range (>20Kb): 456,652  (4.59% / 21.88%)